4TTO image
Deposition Date 2014-06-22
Release Date 2014-09-10
Last Version Date 2024-11-13
Entry Detail
PDB ID:
4TTO
Keywords:
Title:
Quasi-racemic structure of [V25A] kalata B1
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.32
R-Value Work:
0.24
R-Value Observed:
0.25
Space Group:
P -1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Kalata-B1
Gene (Uniprot):OAK1
Mutagens:V25A
Chain IDs:A
Chain Length:29
Number of Molecules:1
Biological Source:Oldenlandia affinis
Protein Blast
Polymer Type:polypeptide(D)
Molecule:D-kalata B1
Mutagens:V25A
Chain IDs:B
Chain Length:29
Number of Molecules:1
Biological Source:Synthetic construct
Primary Citation
Racemic and Quasi-Racemic X-ray Structures of Cyclic Disulfide-Rich Peptide Drug Scaffolds.
Angew.Chem.Int.Ed.Engl. 53 11236 11241 (2014)
PMID: 25168664 DOI: 10.1002/anie.201406563

Abstact

Cyclic disulfide-rich peptides have exceptional stability and are promising frameworks for drug design. We were interested in obtaining X-ray structures of these peptides to assist in drug design applications, but disulfide-rich peptides can be notoriously difficult to crystallize. To overcome this limitation, we chemically synthesized the L- and D-forms of three prototypic cyclic disulfide-rich peptides: SFTI-1 (14-mer with one disulfide bond), cVc1.1 (22-mer with two disulfide bonds), and kB1 (29-mer with three disulfide bonds) for racemic crystallization studies. Facile crystal formation occurred from a racemic mixture of each peptide, giving structures solved at resolutions from 1.25 Å to 1.9 Å. Additionally, we obtained the quasi-racemic structures of two mutants of kB1, [G6A]kB1, and [V25A]kB1, which were solved at a resolution of 1.25 Å and 2.3 Å, respectively. The racemic crystallography approach appears to have broad utility in the structural biology of cyclic peptides.

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