4TOT image
Deposition Date 2014-06-06
Release Date 2014-11-12
Last Version Date 2024-04-03
Entry Detail
PDB ID:
4TOT
Title:
Crystal structure of rat cyclophilin D in complex with a potent nonimmunosuppressive inhibitor
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.39 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Peptidyl-prolyl cis-trans isomerase F, mitochondrial
Gene (Uniprot):Ppif
Chain IDs:A, B, C, D
Chain Length:165
Number of Molecules:4
Biological Source:Rattus norvegicus
Polymer Type:polypeptide(L)
Molecule:nonimmunosuppressive inhibitor
Chain IDs:E, F, G, H
Chain Length:11
Number of Molecules:4
Biological Source:synthetic construct
Peptide-like Molecules
PRD_002115
Primary Citation
Potent nonimmunosuppressive cyclophilin inhibitors with improved pharmaceutical properties and decreased transporter inhibition.
J.Med.Chem. 57 8503 8516 (2014)
PMID: 25310383 DOI: 10.1021/jm500862r

Abstact

Nonimmunosuppressive cyclophilin inhibitors have demonstrated efficacy for the treatment of hepatitis C infection (HCV). However, alisporivir, cyclosporin A, and most other cyclosporins are potent inhibitors of OATP1B1, MRP2, MDR1, and other important drug transporters. Reduction of the side chain hydrophobicity of the P4 residue preserves cyclophilin binding and antiviral potency while decreasing transporter inhibition. Representative inhibitor 33 (NIM258) is a less potent transporter inhibitor relative to previously described cyclosporins, retains anti-HCV activity in cell culture, and has an acceptable pharmacokinetic profile in rats and dogs. An X-ray structure of 33 bound to rat cyclophilin D is reported.

Legend

Protein

Chemical

Disease

Primary Citation of related structures