4TNW image
Deposition Date 2014-06-05
Release Date 2014-08-13
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4TNW
Title:
C. elegans glutamate-gated chloride channel (GluCl) in complex with Fab and POPC in a lipid-modulated conformation
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Avermectin-sensitive glutamate-gated chloride channel GluCl alpha
Gene (Uniprot):glc-1
Chain IDs:A, B, C, D, E, N (auth: P), O (auth: Q), P (auth: R), Q (auth: S), R (auth: T)
Chain Length:347
Number of Molecules:10
Biological Source:Caenorhabditis elegans
Polymer Type:polypeptide(L)
Molecule:Mouse monoclonal Fab fragment, heavy chain
Chain IDs:F, G, H, I, S (auth: U), T (auth: V), U (auth: W), V (auth: X), W (auth: Y), CA (auth: J)
Chain Length:224
Number of Molecules:10
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Mouse monoclonal Fab fragment, light chain
Chain IDs:J (auth: K), K (auth: L), L (auth: N), M (auth: O), X (auth: Z), Y (auth: f), Z (auth: g), AA (auth: h), BA (auth: i), DA (auth: M)
Chain Length:224
Number of Molecules:10
Biological Source:Mus musculus
Primary Citation
X-ray structures of GluCl in apo states reveal a gating mechanism of Cys-loop receptors.
Nature 512 333 337 (2014)
PMID: 25143115 DOI: 10.1038/nature13669

Abstact

Cys-loop receptors are neurotransmitter-gated ion channels that are essential mediators of fast chemical neurotransmission and are associated with a large number of neurological diseases and disorders, as well as parasitic infections. Members of this ion channel superfamily mediate excitatory or inhibitory neurotransmission depending on their ligand and ion selectivity. Structural information for Cys-loop receptors comes from several sources including electron microscopic studies of the nicotinic acetylcholine receptor, high-resolution X-ray structures of extracellular domains and X-ray structures of bacterial orthologues. In 2011 our group published structures of the Caenorhabditis elegans glutamate-gated chloride channel (GluCl) in complex with the allosteric partial agonist ivermectin, which provided insights into the structure of a possibly open state of a eukaryotic Cys-loop receptor, the basis for anion selectivity and channel block, and the mechanism by which ivermectin and related molecules stabilize the open state and potentiate neurotransmitter binding. However, there remain unanswered questions about the mechanism of channel opening and closing, the location and nature of the shut ion channel gate, the transitions between the closed/resting, open/activated and closed/desensitized states, and the mechanism by which conformational changes are coupled between the extracellular, orthosteric agonist binding domain and the transmembrane, ion channel domain. Here we present two conformationally distinct structures of C. elegans GluCl in the absence of ivermectin. Structural comparisons reveal a quaternary activation mechanism arising from rigid-body movements between the extracellular and transmembrane domains and a mechanism for modulation of the receptor by phospholipids.

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Primary Citation of related structures