4TM8 image
Deposition Date 2014-05-31
Release Date 2015-06-03
Last Version Date 2024-03-20
Entry Detail
PDB ID:
4TM8
Keywords:
Title:
Crystal structure of 6-phosphogluconolactonase from Mycobacterium smegmatis N131D mutant
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.81 Å
R-Value Free:
0.20
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
I 41 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:6-phosphogluconolactonase
Gene (Uniprot):pgl
Mutagens:N131D
Chain IDs:A
Chain Length:256
Number of Molecules:1
Biological Source:Mycobacterium smegmatis
Ligand Molecules
Primary Citation
Enzyme repurposing of a hydrolase as an emergent peroxidase upon metal binding.
Chem Sci 6 4060 4065 (2015)
PMID: 29218172 DOI: 10.1039/c5sc01065a

Abstact

As an alternative to Darwinian evolution relying on catalytic promiscuity, a protein may acquire auxiliary function upon metal binding, thus providing it with a novel catalytic machinery. Here we show that addition of cupric ions to a 6-phosphogluconolactonase 6-PGLac bearing a putative metal binding site leads to the emergence of peroxidase activity (kcat 7.8 × 10-2 s-1, KM 1.1 × 10-5 M). Both X-ray crystallographic and EPR data of the copper-loaded enzyme Cu·6-PGLac reveal a bis-histidine coordination site, located within a shallow binding pocket capable of accommodating the o-dianisidine substrate.

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Protein

Chemical

Disease

Primary Citation of related structures