4TKV image
Deposition Date 2014-05-28
Release Date 2014-10-01
Last Version Date 2023-12-27
Entry Detail
PDB ID:
4TKV
Keywords:
Title:
CO-bound Nitrogenase MoFe-protein from A. vinelandii
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.50 Å
R-Value Free:
0.15
R-Value Work:
0.13
R-Value Observed:
0.13
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Nitrogenase molybdenum-iron protein alpha chain
Gene (Uniprot):nifD
Chain IDs:A, C
Chain Length:492
Number of Molecules:2
Biological Source:Azotobacter vinelandii
Polymer Type:polypeptide(L)
Molecule:Nitrogenase molybdenum-iron protein beta chain
Gene (Uniprot):nifK
Chain IDs:B, D
Chain Length:523
Number of Molecules:2
Biological Source:Azotobacter vinelandii
Primary Citation
Ligand binding to the FeMo-cofactor: structures of CO-bound and reactivated nitrogenase.
Science 345 1620 1623 (2014)
PMID: 25258081 DOI: 10.1126/science.1256679

Abstact

The mechanism of nitrogenase remains enigmatic, with a major unresolved issue concerning how inhibitors and substrates bind to the active site. We report a crystal structure of carbon monoxide (CO)-inhibited nitrogenase molybdenum-iron (MoFe)-protein at 1.50 angstrom resolution, which reveals a CO molecule bridging Fe2 and Fe6 of the FeMo-cofactor. The μ2 binding geometry is achieved by replacing a belt-sulfur atom (S2B) and highlights the generation of a reactive iron species uncovered by the displacement of sulfur. The CO inhibition is fully reversible as established by regain of enzyme activity and reappearance of S2B in the 1.43 angstrom resolution structure of the reactivated enzyme. The substantial and reversible reorganization of the FeMo-cofactor accompanying CO binding was unanticipated and provides insights into a catalytically competent state of nitrogenase.

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Primary Citation of related structures