4TKQ image
Deposition Date 2014-05-27
Release Date 2014-06-18
Last Version Date 2023-12-27
Entry Detail
PDB ID:
4TKQ
Title:
Native-SAD phasing for YetJ from Bacillus Subtilis
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Uncharacterized protein YetJ
Gene (Uniprot):calJ
Chain IDs:A
Chain Length:217
Number of Molecules:1
Biological Source:Bacillus subtilis
Primary Citation
Multi-crystal native SAD analysis at 6 keV.
Acta Crystallogr.,Sect.D 70 2544 2557 (2014)
PMID: 25286840 DOI: 10.1107/S1399004714013376

Abstact

Anomalous diffraction signals from typical native macromolecules are very weak, frustrating their use in de novo structure determination. Here, native SAD procedures are described to enhance signal to noise in anomalous diffraction by using multiple crystals in combination with synchrotron X-rays at 6 keV. Increased anomalous signals were obtained at 6 keV compared with 7 keV X-ray energy, which was used for previous native SAD analyses. A feasibility test of multi-crystal-based native SAD phasing was performed at 3.2 Å resolution for a known tyrosine protein kinase domain, and real-life applications were made to two novel membrane proteins at about 3.0 Å resolution. The three applications collectively serve to validate the robust feasibility of native SAD phasing at lower energy.

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Primary Citation of related structures