4TKP image
Deposition Date 2014-05-27
Release Date 2015-07-22
Last Version Date 2023-12-27
Entry Detail
PDB ID:
4TKP
Keywords:
Title:
Complex of Ubc13 with the RING domain of the TRIM5alpha retroviral restriction factor
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Macaca mulatta (Taxon ID: 9544)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.08 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 41 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-conjugating enzyme E2 N
Gene (Uniprot):UBE2N
Chain IDs:A
Chain Length:153
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Tripartite motif-containing protein 5
Gene (Uniprot):TRIM5
Chain IDs:B
Chain Length:93
Number of Molecules:1
Biological Source:Macaca mulatta
Primary Citation
RING Dimerization Links Higher-Order Assembly of TRIM5 alpha to Synthesis of K63-Linked Polyubiquitin.
Cell Rep 12 788 797 (2015)
PMID: 26212332 DOI: 10.1016/j.celrep.2015.06.072

Abstact

Members of the tripartite motif (TRIM) protein family of RING E3 ubiquitin (Ub) ligases promote innate immune responses by catalyzing synthesis of polyubiquitin chains linked through lysine 63 (K63). Here, we investigate the mechanism by which the TRIM5α retroviral restriction factor activates Ubc13, the K63-linkage-specific E2. Structural, biochemical, and functional characterization of the TRIM5α:Ubc13-Ub interactions reveals that activation of the Ubc13-Ub conjugate requires dimerization of the TRIM5α RING domain. Our data explain how higher-order oligomerization of TRIM5α, which is promoted by the interaction with the retroviral capsid, enhances the E3 Ub ligase activity of TRIM5α and contributes to its antiretroviral function. This E3 mechanism, in which RING dimerization is transient and depends on the interaction of the TRIM protein with the ligand, is likely to be conserved in many members of the TRIM family and may have evolved to facilitate recognition of repetitive epitope patterns associated with infection.

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