ISDA

Deposition Date 2014-12-02

Release Date 2015-01-14

Last Version Date 2024-11-20

Entry Detail

PDB ID:

4RWD

Keywords:

MEMBRANE PROTEIN

Title:

XFEL structure of the human delta opioid receptor in complex with a bifunctional peptide

Biological Source:

Source Organism:

Escherichia coli (Taxon ID: 562)
Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)

Host Organism:

Spodoptera frugiperda

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.70 Å

R-Value Free:

0.23

R-Value Work:

0.20

R-Value Observed:

0.20

Space Group:

C 1 2 1

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Soluble cytochrome b562,Delta-type opioid receptor
Gene (Uniprot):cybC
Mutagens:M29W, H124I, R138L,M29W, H124I, R138L
Chain IDs:A, B
Chain Length:411
Number of Molecules:2
Biological Source:Escherichia coli, Homo sapiens

UniProt ID:P0ABE7,P41143 Pfam ID:PF07361, PF00001

Polymer Type:polypeptide(L)
Molecule:bifunctional peptide
Chain IDs:C (auth: G), D (auth: H)
Chain Length:5
Number of Molecules:2
Biological Source:synthetic construct

Modified Residue

Compound ID	Chain ID	Parent Comp ID	Details	2D Image
DI7	C	TYR	2,6-DIMETHYL-L-TYROSINE

Ligand Molecules

OLA

OLC

Peptide-like Molecules

PRD_001256

Primary Citation

Structural basis for bifunctional peptide recognition at human delta-opioid receptor.

Fenalti, G, Zatsepin, N.A, Betti, C, Giguere, P, Han, G.W, Ishchenko, A, Liu, W, Guillemyn, K, Zhang, H, James, D, Wang, D, Weierstall, U, Spence, J.C, Boutet, S, Messerschmidt, M, Williams, G.J, Gati, C, Yefanov, O.M, White, T.A, Oberthuer, D, Metz, M, Yoon, C.H, Barty, A, Chapman, H.N, Basu, S, Coe, J, Conrad, C.E, Fromme, R, Fromme, P, Tourwe, D, Schiller, P.W, Roth, B.L, Ballet, S, Katritch, V, Stevens, R.C, Cherezov, V.Show

Nat.Struct.Mol.Biol. 22 265 268 (2015)

PMID: 25686086 DOI: 10.1038/nsmb.2965

Abstact

Bifunctional μ- and δ-opioid receptor (OR) ligands are potential therapeutic alternatives, with diminished side effects, to alkaloid opiate analgesics. We solved the structure of human δ-OR bound to the bifunctional δ-OR antagonist and μ-OR agonist tetrapeptide H-Dmt-Tic-Phe-Phe-NH2 (DIPP-NH2) by serial femtosecond crystallography, revealing a cis-peptide bond between H-Dmt and Tic. The observed receptor-peptide interactions are critical for understanding of the pharmacological profiles of opioid peptides and for development of improved analgesics.

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