4RW3 image
Entry Detail
PDB ID:
4RW3
Keywords:
Title:
Structural insights into substrate binding of brown spider venom class II phospholipases D
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2014-12-01
Release Date:
2015-06-03
Method Details:
Experimental Method:
Resolution:
1.72 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Phospholipase D LiSicTox-alphaIA1bii
Chain IDs:A
Chain Length:302
Number of Molecules:1
Biological Source:Loxosceles intermedia
Primary Citation
Structural Insights into Substrate Binding of Brown Spider Venom Class II Phospholipases D.
Curr Protein Pept Sci 16 768 774 (2015)
PMID: 25961401

Abstact

Phospholipases D (PLDs), the major dermonecrotic factors from brown spider venoms, trigger a range of biological reactions both in vitro and in vivo. Despite their clinical relevance in loxoscelism, structural data is restricted to the apo-form of these enzymes, which has been instrumental in understanding the functional differences between the class I and II spider PLDs. The crystal structures of the native class II PLD from Loxosceles intermedia complexed with myo-inositol 1-phosphate and the inactive mutant H12A complexed with fatty acids indicate the existence of a strong ligand-dependent conformation change of the highly conserved aromatic residues, Tyr 223 and Trp225 indicating their roles in substrate binding. These results provided insights into the structural determinants for substrate recognition and binding by class II PLDs.

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Primary Citation of related structures