4RVY image
Deposition Date 2014-11-29
Release Date 2015-11-04
Last Version Date 2024-11-27
Entry Detail
PDB ID:
4RVY
Keywords:
Title:
Serial Time resolved crystallography of Photosystem II using a femtosecond X-ray laser. The S state after two flashes (S3)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
5.50 Å
R-Value Free:
0.29
R-Value Work:
0.28
R-Value Observed:
0.28
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Photosystem II protein D1 1
Gene (Uniprot):psbA1
Chain IDs:A, B (auth: a)
Chain Length:334
Number of Molecules:2
Biological Source:Thermosynechococcus elongatus
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP47 reaction center protein
Gene (Uniprot):psbB
Chain IDs:C (auth: B), D (auth: b)
Chain Length:504
Number of Molecules:2
Biological Source:Thermosynechococcus elongatus
Polymer Type:polypeptide(L)
Molecule:Photosystem II CP43 reaction center protein
Gene (Uniprot):psbC
Chain IDs:E (auth: C), F (auth: c)
Chain Length:461
Number of Molecules:2
Biological Source:Thermosynechococcus elongatus
Polymer Type:polypeptide(L)
Molecule:Photosystem II D2 protein
Gene (Uniprot):psbD1, psbD2
Chain IDs:G (auth: D), H (auth: d)
Chain Length:342
Number of Molecules:2
Biological Source:Thermosynechococcus elongatus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit alpha
Gene (Uniprot):psbE
Chain IDs:I (auth: E), J (auth: e)
Chain Length:81
Number of Molecules:2
Biological Source:Thermosynechococcus elongatus
Polymer Type:polypeptide(L)
Molecule:Cytochrome b559 subunit beta
Gene (Uniprot):psbF
Chain IDs:K (auth: F), L (auth: f)
Chain Length:34
Number of Molecules:2
Biological Source:Thermosynechococcus elongatus
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein H
Gene (Uniprot):psbH
Chain IDs:M (auth: H), N (auth: h)
Chain Length:65
Number of Molecules:2
Biological Source:Thermosynechococcus elongatus
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein I
Gene (Uniprot):psbI
Chain IDs:O (auth: I), P (auth: i)
Chain Length:38
Number of Molecules:2
Biological Source:Thermosynechococcus elongatus
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein J
Gene (Uniprot):psbJ
Chain IDs:Q (auth: J), R (auth: j)
Chain Length:40
Number of Molecules:2
Biological Source:Thermosynechococcus elongatus
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein K
Gene (Uniprot):psbK
Chain IDs:S (auth: K), T (auth: k)
Chain Length:37
Number of Molecules:2
Biological Source:Thermosynechococcus elongatus
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein L
Gene (Uniprot):psbL
Chain IDs:U (auth: L), V (auth: l)
Chain Length:37
Number of Molecules:2
Biological Source:Thermosynechococcus elongatus
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein M
Gene (Uniprot):psbM
Chain IDs:W (auth: M), X (auth: m)
Chain Length:34
Number of Molecules:2
Biological Source:Thermosynechococcus elongatus
Polymer Type:polypeptide(L)
Molecule:Photosystem II manganese-stabilizing polypeptide
Gene (Uniprot):psbO
Chain IDs:Y (auth: O), Z (auth: o)
Chain Length:243
Number of Molecules:2
Biological Source:Thermosynechococcus elongatus
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein T
Gene (Uniprot):psbT
Chain IDs:AA (auth: T), BA (auth: t)
Chain Length:30
Number of Molecules:2
Biological Source:Thermosynechococcus elongatus
Polymer Type:polypeptide(L)
Molecule:Photosystem II 12 kDa extrinsic protein
Gene (Uniprot):psbU
Chain IDs:CA (auth: U), DA (auth: u)
Chain Length:97
Number of Molecules:2
Biological Source:Thermosynechococcus elongatus
Polymer Type:polypeptide(L)
Molecule:Cytochrome c-550
Gene (Uniprot):psbV
Chain IDs:EA (auth: V), FA (auth: v)
Chain Length:137
Number of Molecules:2
Biological Source:Thermosynechococcus elongatus
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center X protein
Gene (Uniprot):psbX
Chain IDs:GA (auth: X), HA (auth: x)
Chain Length:39
Number of Molecules:2
Biological Source:Thermosynechococcus elongatus
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein Ycf12
Gene (Uniprot):psb30
Chain IDs:IA (auth: Y), JA (auth: y)
Chain Length:29
Number of Molecules:2
Biological Source:Thermosynechococcus elongatus
Polymer Type:polypeptide(L)
Molecule:Photosystem II reaction center protein Z
Gene (Uniprot):psbZ
Chain IDs:KA (auth: Z), LA (auth: z)
Chain Length:62
Number of Molecules:2
Biological Source:Thermosynechococcus elongatus
Primary Citation

Abstact

Photosynthesis, a process catalysed by plants, algae and cyanobacteria converts sunlight to energy thus sustaining all higher life on Earth. Two large membrane protein complexes, photosystem I and II (PSI and PSII), act in series to catalyse the light-driven reactions in photosynthesis. PSII catalyses the light-driven water splitting process, which maintains the Earth's oxygenic atmosphere. In this process, the oxygen-evolving complex (OEC) of PSII cycles through five states, S0 to S4, in which four electrons are sequentially extracted from the OEC in four light-driven charge-separation events. Here we describe time resolved experiments on PSII nano/microcrystals from Thermosynechococcus elongatus performed with the recently developed technique of serial femtosecond crystallography. Structures have been determined from PSII in the dark S1 state and after double laser excitation (putative S3 state) at 5 and 5.5 Å resolution, respectively. The results provide evidence that PSII undergoes significant conformational changes at the electron acceptor side and at the Mn4CaO5 core of the OEC. These include an elongation of the metal cluster, accompanied by changes in the protein environment, which could allow for binding of the second substrate water molecule between the more distant protruding Mn (referred to as the 'dangler' Mn) and the Mn3CaOx cubane in the S2 to S3 transition, as predicted by spectroscopic and computational studies. This work shows the great potential for time-resolved serial femtosecond crystallography for investigation of catalytic processes in biomolecules.

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Primary Citation of related structures