4RLZ image
Deposition Date 2014-10-18
Release Date 2015-06-24
Last Version Date 2023-11-08
Entry Detail
PDB ID:
4RLZ
Keywords:
Title:
Crystal structure of Norovirus OIF P domain
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.19 Å
R-Value Free:
0.15
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Capsid protein
Mutagens:H375N, H376I, S377A, Q378S, H379N, L387V, V389I
Chain IDs:A, B
Chain Length:316
Number of Molecules:2
Biological Source:Norovirus NLV/IF1998/2003/Iraq
Ligand Molecules
Primary Citation
A Unique Human Norovirus Lineage with a Distinct HBGA Binding Interface.
Plos Pathog. 11 e1005025 e1005025 (2015)
PMID: 26147716 DOI: 10.1371/journal.ppat.1005025

Abstact

Norovirus (NoV) causes epidemic acute gastroenteritis in humans, whereby histo-blood group antigens (HBGAs) play an important role in host susceptibility. Each of the two major genogroups (GI and GII) of human NoVs recognizes a unique set of HBGAs through a distinct binding interface that is conserved within a genogroup, indicating a distinct evolutionary path for each genogroup. Here, we characterize a Lewis a (Lea) antigen binding strain (OIF virus) in the GII.21 genotype that does not share the conserved GII binding interface, revealing a new evolution lineage with a distinct HBGA binding interface. Sequence alignment showed that the major residues contributing to the new HBGA binding interface are conserved among most members of the GII.21, as well as a closely related GII.13 genotype. In addition, we found that glycerol inhibits OIF binding to HBGAs, potentially allowing production of cheap antivirals against human NoVs. Taken together, our results reveal a new evolutionary lineage of NoVs selected by HBGAs, a finding that is important for understanding the diversity and widespread nature of NoVs.

Legend

Protein

Chemical

Disease

Primary Citation of related structures