4RJ9 image
Deposition Date 2014-10-08
Release Date 2015-08-26
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4RJ9
Keywords:
Title:
Structure of a plant specific C2 domain protein, OsGAP1 from rice
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.63 Å
R-Value Free:
0.20
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:C2 domain-containing protein-like
Gene (Uniprot):GAP1
Chain IDs:A
Chain Length:165
Number of Molecules:1
Biological Source:Oryza sativa Japonica Group
Primary Citation
Site-directed Mutagenesis Shows the Significance of Interactions with Phospholipids and the G-protein OsYchF1 for the Physiological Functions of the Rice GTPase-activating Protein 1 (OsGAP1).
J.Biol.Chem. 290 23984 23996 (2015)
PMID: 26286751 DOI: 10.1074/jbc.M115.655639

Abstact

The C2 domain is one of the most diverse phospholipid-binding domains mediating cellular signaling. One group of C2-domain proteins are plant-specific and are characterized by their small sizes and simple structures. We have previously reported that a member of this group, OsGAP1, is able to alleviate salt stress and stimulate defense responses, and bind to both phospholipids and an unconventional G-protein, OsYchF1. Here we solved the crystal structure of OsGAP1 to a resolution of 1.63 Å. Using site-directed mutagenesis, we successfully differentiated between the clusters of surface residues that are required for binding to phospholipids versus OsYchF1, which, in turn, is critical for its role in stimulating defense responses. On the other hand, the ability to alleviate salt stress by OsGAP1 is dependent only on its ability to bind OsYchF1 and is independent of its phospholipid-binding activity.

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Primary Citation of related structures