4RIQ image
Deposition Date 2014-10-07
Release Date 2014-12-17
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4RIQ
Title:
Crystal structure of DPY-30 dimerization/docking domain in complex with Ash2L Sdc1-DPY-30 Interacting region (SDI)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.23 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Protein dpy-30 homolog
Gene (Uniprot):DPY30
Chain IDs:A, B, D, E, G, H, J, K, M, N, P, Q, S, T, V, X (auth: Z)
Chain Length:56
Number of Molecules:16
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Set1/Ash2 histone methyltransferase complex subunit ASH2
Gene (Uniprot):ASH2L
Chain IDs:C, F, I, L, O, R, U, W (auth: X)
Chain Length:27
Number of Molecules:8
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Molecular Basis for DPY-30 Association to COMPASS-like and NURF Complexes.
Structure 22 1821 1830 (2014)
PMID: 25456412 DOI: 10.1016/j.str.2014.10.002

Abstact

DPY-30 is a subunit of mammalian COMPASS-like complexes (complex of proteins associated with Set1) and regulates global histone H3 Lys-4 trimethylation. Here we report structural evidence showing that the incorporation of DPY-30 into COMPASS-like complexes is mediated by several hydrophobic interactions between an amphipathic α helix located on the C terminus of COMPASS subunit ASH2L and the inner surface of the DPY-30 dimerization/docking (D/D) module. Mutations impairing the interaction between ASH2L and DPY-30 result in a loss of histone H3K4me3 at the β locus control region and cause a delay in erythroid cell terminal differentiation. Using overlay assays, we defined a consensus sequence for DPY-30 binding proteins and found that DPY-30 interacts with BAP18, a subunit of the nucleosome remodeling factor complex. Overall, our results indicate that the ASH2L/DPY-30 complex is important for cell differentiation and provide insights into the ability of DPY-30 to associate with functionally divergent multisubunit complexes.

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