ISDA: 4RHV

Deposition Date 1988-01-25

Release Date 1988-04-16

Last Version Date 2024-05-22

Entry Detail

PDB ID:

4RHV

Keywords:

VIRUS

Title:

THE USE OF MOLECULAR-REPLACEMENT PHASES FOR THE REFINEMENT OF THE HUMAN RHINOVIRUS 14 STRUCTURE

Biological Source:

Source Organism(s):

Human rhinovirus 14 (Taxon ID: 12131)

Expression System(s):

Homo sapiens

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.00 Å

R-Value Work:

0.16

Space Group:

P 21 3

Download Validation Report

Macromolecular Entities

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)
Chain IDs:A (auth: 1)
Chain Length:289
Number of Molecules:1
Biological Source:Human rhinovirus 14

UniProt ID:P03303 Pfam ID:PF00073, PF02226

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP2)
Chain IDs:B (auth: 2)
Chain Length:262
Number of Molecules:1
Biological Source:Human rhinovirus 14

UniProt ID:P03303 Pfam ID:PF00073, PF02226

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP3)
Chain IDs:C (auth: 3)
Chain Length:236
Number of Molecules:1
Biological Source:Human rhinovirus 14

UniProt ID:P03303 Pfam ID:PF00073, PF02226

Structures with similar UniProt ID

Protein Blast

Polymer Type:polypeptide(L)
Molecule:HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP4)
Chain IDs:D (auth: 4)
Chain Length:68
Number of Molecules:1
Biological Source:Human rhinovirus 14

UniProt ID:P03303 Pfam ID:PF00073, PF02226

Primary Citation

The use of molecular-replacement phases for the refinement of the human rhinovirus 14 structure.

Arnold, E, Rossmann, M.G, Arnold, E, Rossmann, M.G, Arnold, E, Vriend, G, Luo, M, Griffith, J.P, Kamer, G, Erickson, J.W, Johnson, J.E, Rossmann, M.G, Arnold, E, Luo, M, Vriend, G, Rossmann, M.G, Palmenberg, A.C, Parks, G.D, Nicklin, M.J.H, Wimmer, E, Smith, T.J, Kremer, M.J, Luo, M, Vriend, G, Arnold, E, Kamer, G, Rossmann, M.G, Mckinlay, M.A, Diana, G.D, Otto, M.J, Rossmann, M.G, Arnold, E, Erickson, J.W, Frankenberger, E.A, Griffith, J.P, Hecht, H.-J, Johnson, J.E, Kamer, G, Luo, M, Vriend, G, Rossmann, M.G, Arnold, E, Erickson, J.W, Frankenberger, E.A, Griffith, J.P, Hecht, H.-J, Johnson, J.E, Kamer, G, Luo, M, Mosser, A.G, Rueckert, R.R, Sherry, B, Vriend, G, Arnold, E, Erickson, J.W, Fout, G.S, Frankenberger, E.A, Hecht, H.-J, Luo, M, Rossmann, M.G, Rueckert, R.R, Luo, M, Arnold, E, Erickson, J.W, Rossmann, M.G, Boege, U, Scraba, D.G, Erickson, J.W, Frankenberger, E.A, Rossmann, M.G, Fout, G.S, Medappa, K.C, Rueckert, R.R.Show

Acta Crystallogr.,Sect.A 44 270 282 (1988)

PMID: 2856083 DOI: 10.1107/S0108767387011875

Abstact

The structure of human rhinovirus 14 has been refined, by the method of restrained least squares, to an R factor of 0.16 for various random samples between 6 and 3 A resolution with F greater than 3 sigma (F). As a first step the non-crystallographic symmetry parameters were optimized using the initial atomic model in a rigid-body refinement procedure. Phase determination by the molecular-replacement phase extension and refinement procedure was continued to 2.94 A resolution, employing the improved non-crystallographic symmetry operators. The resultant structure-factor phases and weights, together with the measured amplitudes, constituted the X-ray observations used in the restrained refinement. The Hendrickson-Konnert program system [Konnert & Hendrickson (1980). Acta Cryst. A36, 344-350] was modified to incorporate non-crystallographic symmetry constrains and structure-factor phases as observations. The non-bonded contacts between subunits related by non-crystallographic symmetry were also restrained.

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Primary Citation of related structures

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