4RC1 image
Deposition Date 2014-09-14
Release Date 2014-11-12
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4RC1
Title:
Structure of the methanofuran/methanopterin biosynthetic enzyme MJ1099 from Methanocaldococcus jannaschii with PRPP
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:UPF0264 protein MJ1099
Gene (Uniprot):mfnB
Chain IDs:A, B, C, D, E, F, G, H, I
Chain Length:242
Number of Molecules:9
Biological Source:Methanocaldococcus jannaschii DSM 2661
Ligand Molecules
Primary Citation
Structure of the methanofuran/methanopterin-biosynthetic enzyme MJ1099 from Methanocaldococcus jannaschii.
Acta Crystallogr F Struct Biol Commun 70 1472 1479 (2014)
PMID: 25372812 DOI: 10.1107/S2053230X1402130X

Abstact

Prior studies have indicated that MJ1099 from Methanocaldococcus jannaschii has roles in the biosynthesis of tetrahydromethanopterin and methanofuran, two key cofactors of one-carbon (C1) metabolism in diverse organisms including the methanogenic archaea. Here, the structure of MJ1099 has been solved to 1.7 Å resolution using anomalous scattering methods. The results indicate that MJ1099 is a member of the TIM-barrel superfamily and that it is a homohexamer. Bioinformatic analyses identified a potential active site that is highly conserved among MJ1099 homologs and the key amino acids involved were identified. The results presented here should guide further studies of MJ1099 including mechanistic studies and possibly the development of inhibitors that target the methanogenic archaea in the digestive tracts of humans and that are a source of the greenhouse gas methane.

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Protein

Chemical

Disease

Primary Citation of related structures