4R9V image
Deposition Date 2014-09-08
Release Date 2014-12-03
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4R9V
Keywords:
Title:
Crystal structure of sialyltransferase from photobacterium damselae, residues 113-497 corresponding to the gt-b domain
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Sialyltransferase 0160
Gene (Uniprot):bst
Chain IDs:A
Chain Length:406
Number of Molecules:1
Biological Source:Photobacterium damselae
Ligand Molecules
Primary Citation
Crystal structures of sialyltransferase from Photobacterium damselae.
Febs Lett. 588 4720 4729 (2014)
PMID: 25451227 DOI: 10.1016/j.febslet.2014.11.003

Abstact

Sialyltransferase structures fall into either GT-A or GT-B glycosyltransferase fold. Some sialyltransferases from the Photobacterium genus have been shown to contain an additional N-terminal immunoglobulin (Ig)-like domain. Photobacterium damselae α2-6-sialyltransferase has been used efficiently in enzymatic and chemoenzymatic synthesis of α2-6-linked sialosides. Here we report three crystal structures of this enzyme. Two structures with and without a donor substrate analog CMP-3F(a)Neu5Ac contain an immunoglobulin (Ig)-like domain and adopt the GT-B sialyltransferase fold. The binary structure reveals a non-productive pre-Michaelis complex, which are caused by crystal lattice contacts that prevent the large conformational changes. The third structure lacks the Ig-domain. Comparison of the three structures reveals small inherent flexibility between the two Rossmann-like domains of the GT-B fold.

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Primary Citation of related structures