ISDA

Deposition Date 2014-09-03

Release Date 2014-12-24

Last Version Date 2024-03-20

Entry Detail

PDB ID:

4R8T

Keywords:

HYDROLASE

Title:

Structure of JEV protease

Biological Source:

Source Organism:

Japanese encephalitis virus (Taxon ID: 11076)
Japanese encephalitis virus (Taxon ID: 11072)

Host Organism:

Escherichia coli

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

2.13 Å

R-Value Free:

0.21

R-Value Work:

0.16

R-Value Observed:

0.16

Space Group:

P 62

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Macromolecular Entities

Protein Blast

Polymer Type:polypeptide(L)
Molecule:Serine protease subunit NS2B
Chain IDs:A
Chain Length:21
Number of Molecules:1
Biological Source:Japanese encephalitis virus

UniProt ID:P14403

Protein Blast

Polymer Type:polypeptide(L)
Molecule:NS3
Chain IDs:B
Chain Length:141
Number of Molecules:1
Biological Source:Japanese encephalitis virus

UniProt ID:O90417 Pfam ID:PF00949 EC:2.7.7.48

Ligand Molecules

Primary Citation

Fast native-SAD phasing for routine macromolecular structure determination.

Weinert, T, Olieric, V, Waltersperger, S, Panepucci, E, Chen, L, Zhang, H, Zhou, D, Rose, J, Ebihara, A, Kuramitsu, S, Li, D, Howe, N, Schnapp, G, Pautsch, A, Bargsten, K, Prota, A.E, Surana, P, Kottur, J, Nair, D.T, Basilico, F, Cecatiello, V, Pasqualato, S, Boland, A, Weichenrieder, O, Wang, B.C, Steinmetz, M.O, Caffrey, M, Wang, M.Show

Nat.Methods 12 131 133 (2015)

PMID: 25506719 DOI: 10.1038/nmeth.3211

Abstact

We describe a data collection method that uses a single crystal to solve X-ray structures by native SAD (single-wavelength anomalous diffraction). We solved the structures of 11 real-life examples, including a human membrane protein, a protein-DNA complex and a 266-kDa multiprotein-ligand complex, using this method. The data collection strategy is suitable for routine structure determination and can be implemented at most macromolecular crystallography synchrotron beamlines.

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Primary Citation of related structures