4R7P image
Deposition Date 2014-08-28
Release Date 2015-04-22
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4R7P
Keywords:
Title:
Human UDP-glucose pyrophosphorylase isoform 1 in complex with UDP-glucose
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.35 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
P 31 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:UTP--glucose-1-phosphate uridylyltransferase
Gene (Uniprot):UGP2
Mutagens:none
Chain IDs:A, B, C, D
Chain Length:526
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
A Quaternary Mechanism Enables the Complex Biological Functions of Octameric Human UDP-glucose Pyrophosphorylase, a Key Enzyme in Cell Metabolism.
Sci Rep 5 9618 9618 (?)
PMID: 25860585 DOI: 10.1038/srep09618

Abstact

In mammals, UDP-glucose pyrophosphorylase (UGP) is the only enzyme capable of activating glucose-1-phosphate (Glc-1-P) to UDP-glucose (UDP-Glc), a metabolite located at the intersection of virtually all metabolic pathways in the mammalian cell. Despite the essential role of its product, the molecular basis of UGP function is poorly understood. Here we report the crystal structure of human UGP in complex with its product UDP-Glc. Beyond providing first insight into the active site architecture, we describe the substrate binding mode and intermolecular interactions in the octameric enzyme that are crucial to its activity. Importantly, the quaternary mechanism identified for human UGP in this study may be common for oligomeric sugar-activating nucleotidyltransferases. Elucidating such mechanisms is essential for understanding nucleotide sugar metabolism and opens the perspective for the development of drugs that specifically inhibit simpler organized nucleotidyltransferases in pathogens.

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Primary Citation of related structures