4R4Y image
Deposition Date 2014-08-20
Release Date 2014-12-17
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4R4Y
Keywords:
Title:
Structural basis of a point mutation that causes the genetic disease Aspartylglucosaminuria
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:N(4)-(Beta-N-acetylglucosaminyl)-L-asparaginase
Mutagens:G172D
Chain IDs:A, B
Chain Length:295
Number of Molecules:2
Biological Source:Elizabethkingia miricola
Ligand Molecules
Primary Citation
Structural Basis of a Point Mutation that Causes the Genetic Disease Aspartylglucosaminuria.
Structure 22 1855 1861 (2014)
PMID: 25456816 DOI: 10.1016/j.str.2014.09.014

Abstact

Aspartylglucosaminuria (AGU) is a lysosomal storage disease caused by a metabolic disorder of lysosomes to digest Asn-linked glycoproteins. The specific enzyme linked to AGU is a lysosomal hydrolase called glycosylasparaginase. Crystallographic studies revealed that a surface loop blocks the catalytic center of the mature hydrolase. Autoproteolysis is therefore required to remove this P loop and open up the hydrolase center. Nonetheless, AGU mutations result in misprocessing of their precursors and are deficient in hydrolyzing glycoasparagines. To understand the catalytic and structural consequences of AGU mutations, we have characterized two AGU models, one corresponding to a Finnish allele and the other found in a Canadian family. We also report a 2.1 Å resolution structure of the latter AGU model. The current crystallographic study provides a high-resolution structure of an AGU mutant. It reveals substantial conformation changes at the defective autocleavage site of the AGU mutant, which is trapped as an inactive precursor.

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Protein

Chemical

Disease

Primary Citation of related structures