4R4N image
Entry Detail
PDB ID:
4R4N
Title:
Crystal structure of the anti-hiv-1 antibody 2.2c in complex with hiv-1 93ug037 gp120
Biological Source:
PDB Version:
Deposition Date:
2014-08-19
Release Date:
2014-11-05
Method Details:
Experimental Method:
Resolution:
3.56 Å
R-Value Free:
0.32
R-Value Work:
0.29
R-Value Observed:
0.29
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:HIV-1 gp120
Chain IDs:A, B, E (auth: I), J (auth: E), Q (auth: M), U (auth: P), Y (auth: S), CA (auth: V)
Chain Length:28
Number of Molecules:8
Biological Source:Human immunodeficiency virus 1
Polymer Type:polypeptide(L)
Description:Antibody 2.2c heavy CHAIN
Chain IDs:F (auth: H), I (auth: C), M (auth: F), P (auth: J), T (auth: N), X (auth: Q), BA (auth: T), FA (auth: W)
Chain Length:220
Number of Molecules:8
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Antibody 2.2c LIGHT CHAIN
Chain IDs:D (auth: L), H (auth: D), L (auth: G), O (auth: K), S (auth: O), W (auth: R), AA (auth: U), EA (auth: X)
Chain Length:210
Number of Molecules:8
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:M48U1 peptide
Chain IDs:C (auth: a), G (auth: b), K (auth: e), N (auth: i), R (auth: m), V (auth: p), Z (auth: s), DA (auth: v)
Chain Length:28
Number of Molecules:8
Biological Source:synthetic construct
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN E ASN GLYCOSYLATION SITE
OAS F SER O-ACETYLSERINE
U2X C TYR O-(CYCLOHEXYLMETHYL)-L-TYROSINE
Ligand Molecules
Peptide-like Molecules
PRD_001094
Primary Citation
Structural Definition of an Antibody-Dependent Cellular Cytotoxicity Response Implicated in Reduced Risk for HIV-1 Infection.
J.Virol. 88 12895 12906 (2014)
PMID: 25165110 DOI: 10.1128/JVI.02194-14

Abstact

UNLABELLED The RV144 vaccine trial implicated epitopes in the C1 region of gp120 (A32-like epitopes) as targets of potentially protective antibody-dependent cellular cytotoxicity (ADCC) responses. A32-like epitopes are highly immunogenic, as infected or vaccinated individuals frequently produce antibodies specific for these determinants. Antibody titers, as measured by enzyme-linked immunosorbent assay (ELISA) against these epitopes, however, do not consistently correlate with protection. Here, we report crystal structures of CD4-stabilized gp120 cores complexed with the Fab fragments of two nonneutralizing, A32-like monoclonal antibodies (MAbs), N5-i5 and 2.2c, that compete for antigen binding and have similar antigen-binding affinities yet exhibit a 75-fold difference in ADCC potency. We find that these MAbs recognize overlapping epitopes formed by mobile layers 1 and 2 of the gp120 inner domain, including the C1 and C2 regions, but bind gp120 at different angles via juxtaposed VH and VL contact surfaces. A comparison of structural and immunological data further showed that antibody orientation on bound antigen and the capacity to form multivalent antigen-antibody complexes on target cells were key determinants of ADCC potency, with the latter process having the greater impact. These studies provide atomic-level definition of A32-like epitopes implicated as targets of protective antibodies in RV144. Moreover, these studies establish that epitope structure and mode of antibody binding can dramatically affect the potency of Fc-mediated effector function against HIV-1. These results provide key insights for understanding, refining, and improving the outcome of HIV vaccine trials, in which relevant immune responses are facilitated by A32-like elicited responses. IMPORTANCE HIV-1 Env is a primary target for antibodies elicited during infection. Although a small number of infected individuals elicit broadly neutralizing antibodies, the bulk of the humoral response consists of antibodies that do not neutralize or do so with limited breadth but may effect protection through Fc receptor-dependent processes, such as antibody-dependent cellular cytotoxicity (ADCC). Understanding these nonneutralizing responses is an important aspect of elucidating the complete spectrum of immune response against HIV-1 infection. With this report, we provide the first atomic-level definition of nonneutralizing CD4-induced epitopes in the N-terminal region of the HIV-1 gp120 (A32-like epitopes). Further, our studies point to the dominant role of precise epitope targeting and mode of antibody attachment in ADCC responses even when largely overlapping epitopes are involved. Such information provides key insights into the mechanisms of Fc-mediated function of antibodies to HIV-1 and will help us understand the outcome of vaccine trials based on humoral immunity.

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