4R4D image
Deposition Date 2014-08-19
Release Date 2014-11-12
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4R4D
Keywords:
Title:
Racemic crystal structure of a magnesium-bound B-DNA duplex
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.29 Å
R-Value Free:
0.31
R-Value Work:
0.26
R-Value Observed:
0.27
Space Group:
P -1
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:5'-D(*CP*CP*GP*GP*TP*AP*CP*CP*GP*G)-3'
Chain IDs:A, B, C, D
Chain Length:10
Number of Molecules:4
Biological Source:synthetic construct
Primary Citation
Racemic DNA crystallography.
Angew.Chem.Int.Ed.Engl. 53 14424 14427 (2014)
PMID: 25358289 DOI: 10.1002/anie.201409014

Abstact

Racemates increase the chances of crystallization by allowing molecular contacts to be formed in a greater number of ways. With the advent of protein synthesis, the production of protein racemates and racemic-protein crystallography are now possible. Curiously, racemic DNA crystallography had not been investigated despite the commercial availability of L- and D-deoxyribo-oligonucleotides. Here, we report a study into racemic DNA crystallography showing the strong propensity of racemic DNA mixtures to form racemic crystals. We describe racemic crystal structures of various DNA sequences and folded conformations, including duplexes, quadruplexes, and a four-way junction, showing that the advantages of racemic crystallography should extend to DNA.

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