4R27 image
Entry Detail
PDB ID:
4R27
Keywords:
Title:
Crystal structure of beta-glycosidase BGL167
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2014-08-09
Release Date:
2015-05-27
Method Details:
Experimental Method:
Resolution:
2.03 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Glycoside hydrolase
Mutations:UNP residues 5-425
Chain IDs:A, B
Chain Length:434
Number of Molecules:2
Biological Source:Microbacterium sp. Gsoil167
Primary Citation
Rational design of a beta-glycosidase with high regiospecificity for triterpenoid tailoring
Chembiochem 16 854 860 (2015)
PMID: 25703680 DOI: 10.1002/cbic.201500004

Abstact

Triterpenoids with desired glycosylation patterns have attracted considerable attention as potential therapeutics for inflammatory diseases and various types of cancer. Sugar-hydrolyzing enzymes with high substrate specificity would be far more efficient than other methods for the synthesis of such specialty triterpenoids, but they are yet to be developed. Here we present a strategy to rationally design a β-glycosidase with high regiospecificity for triterpenoids. A β-glycosidase with broad substrate specificity was isolated, and its crystal structure was determined at 2.0 Å resolution. Based on the product profiles and substrate docking simulations, we modeled the substrate binding modes of the enzyme. From the model, the substrate binding cleft of the enzyme was redesigned in a manner that preferentially hydrolyzes glycans at specific glycosylation sites of triterpenoids. The designed mutants were shown to produce a variety of specialty triterpenoids with high purity.

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