4QVG image
Entry Detail
PDB ID:
4QVG
Keywords:
Title:
Crystal structure of S-adenosylmethionine-dependent methyltransferase SibL in its apo form
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2014-07-15
Release Date:
2015-05-27
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.26
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
F 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:SibL
Chain IDs:A, B, C, D
Chain Length:355
Number of Molecules:4
Biological Source:Streptosporangium sibiricum
Ligand Molecules
Primary Citation
Structure and mechanism of an antibiotics-synthesizing 3-hydroxykynurenine C-methyltransferase
Sci Rep 5 10100 10100 (2015)
PMID: 25960001 DOI: 10.1038/srep10100

Abstact

Streptosporangium sibiricum SibL catalyzes the methyl transfer from S-adenosylmethionine (SAM) to 3-hydroxykynurenine (3-HK) to produce S-adenosylhomocysteine (SAH) and 3-hydroxy-4-methyl-kynurenine for sibiromycin biosynthesis. Here, we present the crystal structures of apo-form Ss-SibL, Ss-SibL/SAH binary complex and Ss-SibL/SAH/3-HK ternary complex. Ss-SibL is a homodimer. Each subunit comprises a helical N-terminal domain and a Rossmann-fold C-terminal domain. SAM (or SAH) binding alone results in domain movements, suggesting a two-step catalytic cycle. Analyses of the enzyme-ligand interactions and further mutant studies support a mechanism in which Tyr134 serves as the principal base in the transferase reaction of methyl group from SAM to 3-HK.

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Primary Citation of related structures