4QO7 image
Entry Detail
PDB ID:
4QO7
Title:
Lactate Dehydrogenase A in complex with substituted 3-Hydroxy-2-mercaptocyclohex-2-enone compound 7
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2014-06-19
Release Date:
2014-07-16
Method Details:
Experimental Method:
Resolution:
2.14 Å
R-Value Free:
0.20
R-Value Work:
0.15
R-Value Observed:
0.16
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:L-lactate dehydrogenase A chain
Chain IDs:A, B, C, D
Chain Length:331
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Identification of substituted 3-hydroxy-2-mercaptocyclohex-2-enones as potent inhibitors of human lactate dehydrogenase.
Bioorg.Med.Chem.Lett. 24 3764 3771 (2014)
PMID: 25037916 DOI: 10.1016/j.bmcl.2014.06.076

Abstact

A novel class of 3-hydroxy-2-mercaptocyclohex-2-enone-containing inhibitors of human lactate dehydrogenase (LDH) was identified through a high-throughput screening approach. Biochemical and surface plasmon resonance experiments performed with a screening hit (LDHA IC50=1.7 μM) indicated that the compound specifically associated with human LDHA in a manner that required simultaneous binding of the NADH co-factor. Structural variation of this screening hit resulted in significant improvements in LDHA biochemical inhibition activity (best IC50=0.18 μM). Two crystal structures of optimized compounds bound to human LDHA were obtained and explained many of the observed structure-activity relationships. In addition, an optimized inhibitor exhibited good pharmacokinetic properties after oral administration to rats (F=45%).

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