4QLP image
Deposition Date 2014-06-12
Release Date 2015-07-22
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4QLP
Title:
Atomic structure of tuberculosis necrotizing toxin (TNT) complexed with its immunity factor IFT
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.10 Å
R-Value Free:
0.14
R-Value Work:
0.12
R-Value Observed:
0.12
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:immunity factor IFT
Gene (Uniprot):Rv3902c
Chain IDs:A
Chain Length:176
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Polymer Type:polypeptide(L)
Molecule:Alanine and proline rich protein, tuberculosis necrotizing toxin (TNT)
Gene (Uniprot):cpnT
Chain IDs:B
Chain Length:199
Number of Molecules:1
Biological Source:Mycobacterium tuberculosis
Primary Citation
The tuberculosis necrotizing toxin kills macrophages by hydrolyzing NAD.
Nat.Struct.Mol.Biol. 22 672 678 (2015)
PMID: 26237511 DOI: 10.1038/nsmb.3064

Abstact

Mycobacterium tuberculosis (Mtb) induces necrosis of infected cells to evade immune responses. Recently, we found that Mtb uses the protein CpnT to kill human macrophages by secreting its C-terminal domain, named tuberculosis necrotizing toxin (TNT), which induces necrosis by an unknown mechanism. Here we show that TNT gains access to the cytosol of Mtb-infected macrophages, where it hydrolyzes the essential coenzyme NAD(+). Expression or injection of a noncatalytic TNT mutant showed no cytotoxicity in macrophages or in zebrafish zygotes, respectively, thus demonstrating that the NAD(+) glycohydrolase activity is required for TNT-induced cell death. To prevent self-poisoning, Mtb produces an immunity factor for TNT (IFT) that binds TNT and inhibits its activity. The crystal structure of the TNT-IFT complex revealed a new NAD(+) glycohydrolase fold of TNT, the founding member of a toxin family widespread in pathogenic microorganisms.

Legend

Protein

Chemical

Disease

Primary Citation of related structures