4QIP image
Entry Detail
PDB ID:
4QIP
Keywords:
Title:
Crystal Structure of Major Birch Pollen Allergen Bet v 1 isoform a in complex with Sodium Dodecyl Sulfate
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2014-06-01
Release Date:
2015-01-14
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Major pollen allergen Bet v 1-A
Mutations:D125A
Chain IDs:A
Chain Length:159
Number of Molecules:1
Biological Source:Betula pendula
Primary Citation
Ligand binding modulates the structural dynamics and compactness of the major birch pollen allergen
Biophys.J. 107 2963 2972 (2014)
PMID: 25517162 DOI: 10.1016/j.bpj.2014.10.062

Abstact

Pathogenesis-related plant proteins of class-10 (PR-10) are essential for storage and transport of small molecules. A prominent member of the PR-10 family, the major birch pollen allergen Bet v 1, is the main cause of spring pollinosis in the temperate climate zone of the northern hemisphere. Bet v 1 binds various ligand molecules to its internal cavity, and immunologic effects of the presence of ligand have been discussed. However, the mechanism of binding has remained elusive. In this study, we show that in solution Bet v 1.0101 is conformationally heterogeneous and cannot be represented by a single structure. NMR relaxation data suggest that structural dynamics are fundamental for ligand access to the protein interior. Complex formation then leads to significant rigidification of the protein along with a compaction of its 3D structure. The data presented herein provide a structural basis for understanding the immunogenic and allergenic potential of ligand binding to Bet v 1 allergens.

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