4QI3 image
Deposition Date 2014-05-30
Release Date 2015-07-15
Last Version Date 2024-10-16
Entry Detail
PDB ID:
4QI3
Keywords:
Title:
Cytochrome domain of Myriococcum thermophilum cellobiose dehydrogenase, MtCYT
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cellobiose dehydrogenase
Gene (Uniprot):CDH
Chain IDs:A, B
Chain Length:208
Number of Molecules:2
Biological Source:Myriococcum thermophilum
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
ASN A ASN GLYCOSYLATION SITE
PCA A GLN PYROGLUTAMIC ACID
SER B SER GLYCOSYLATION SITE
THR A THR GLYCOSYLATION SITE
Primary Citation
Structural basis for cellobiose dehydrogenase action during oxidative cellulose degradation.
Nat Commun 6 7542 7542 (2015)
PMID: 26151670 DOI: 10.1038/ncomms8542

Abstact

A new paradigm for cellulose depolymerization by fungi focuses on an oxidative mechanism involving cellobiose dehydrogenases (CDH) and copper-dependent lytic polysaccharide monooxygenases (LPMO); however, mechanistic studies have been hampered by the lack of structural information regarding CDH. CDH contains a haem-binding cytochrome (CYT) connected via a flexible linker to a flavin-dependent dehydrogenase (DH). Electrons are generated from cellobiose oxidation catalysed by DH and shuttled via CYT to LPMO. Here we present structural analyses that provide a comprehensive picture of CDH conformers, which govern the electron transfer between redox centres. Using structure-based site-directed mutagenesis, rapid kinetics analysis and molecular docking, we demonstrate that flavin-to-haem interdomain electron transfer (IET) is enabled by a haem propionate group and that rapid IET requires a closed CDH state in which the propionate is tightly enfolded by DH. Following haem reduction, CYT reduces LPMO to initiate oxygen activation at the copper centre and subsequent cellulose depolymerization.

Legend

Protein

Chemical

Disease

Primary Citation of related structures