4QH0 image
Deposition Date 2014-05-26
Release Date 2014-11-19
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4QH0
Keywords:
Title:
Crystal structure of NucA from Streptococcus agalactiae with magnesium ion bound
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.19
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 63
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:DNA-entry nuclease (Competence-specific nuclease)
Mutations:H148A
Chain IDs:A, B, C, D
Chain Length:225
Number of Molecules:4
Biological Source:Streptococcus agalactiae ILRI112
Primary Citation
Structural characterization of the virulence factor nuclease A from Streptococcus agalactiae.
Acta Crystallogr.,Sect.D 70 2937 2949 (2014)
PMID: 25372684 DOI: 10.1107/S1399004714019725

Abstact

The group B pathogen Streptococcus agalactiae commonly populates the human gut and urogenital tract, and is a major cause of infection-based mortality in neonatal infants and in elderly or immunocompromised adults. Nuclease A (GBS_NucA), a secreted DNA/RNA nuclease, serves as a virulence factor for S. agalactiae, facilitating bacterial evasion of the human innate immune response. GBS_NucA efficiently degrades the DNA matrix component of neutrophil extracellular traps (NETs), which attempt to kill and clear invading bacteria during the early stages of infection. In order to better understand the mechanisms of DNA substrate binding and catalysis of GBS_NucA, the high-resolution structure of a catalytically inactive mutant (H148G) was solved by X-ray crystallography. Several mutants on the surface of GBS_NucA which might influence DNA substrate binding and catalysis were generated and evaluated using an imidazole chemical rescue technique. While several of these mutants severely inhibited nuclease activity, two mutants (K146R and Q183A) exhibited significantly increased activity. These structural and biochemical studies have greatly increased our understanding of the mechanism of action of GBS_NucA in bacterial virulence and may serve as a foundation for the structure-based drug design of antibacterial compounds targeted to S. agalactiae.

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