4QGE image
Deposition Date 2014-05-22
Release Date 2014-12-10
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4QGE
Title:
phosphodiesterase-9A in complex with inhibitor WYQ-C36D
Biological Source:
Source Organism:
Pan troglodytes (Taxon ID: 9598)
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.26
R-Value Work:
0.24
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Phosphodiesterase 9A
Chain IDs:A, B
Chain Length:533
Number of Molecules:2
Biological Source:Pan troglodytes
Primary Citation
Discovery of a Phosphodiesterase 9A Inhibitor as a Potential Hypoglycemic Agent.
J.Med.Chem. 57 10304 10313 (2014)
PMID: 25432025 DOI: 10.1021/jm500836h

Abstact

Phosphodiesterase 9 (PDE9) inhibitors have been studied as potential therapeutics for treatment of diabetes and Alzheimer's disease. Here we report a potent PDE9 inhibitor 3r that has an IC50 of 0.6 nM and >150-fold selectivity over other PDEs. The HepG2 cell-based assay shows that 3r inhibits the mRNA expression of phosphoenolpyruvate carboxykinase and glucose 6-phosphatase. These activities of 3r, together with the reasonable pharmacokinetic properties and no acute toxicity at 1200 mg/kg dosage, suggest its potential as a hypoglycemic agent. The crystal structure of PDE9-3r reveals significantly different conformation and hydrogen bonding pattern of 3r from those of previously published 28s. Both 3r and 28s form a hydrogen bond with Tyr424, a unique PDE9 residue (except for PDE8), but 3r shows an additional hydrogen bond with Ala452. This structure information might be useful for design of PDE9 inhibitors.

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