4QCI image
Entry Detail
PDB ID:
4QCI
Title:
PDGF-B blocking antibody bound to PDGF-BB
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2014-05-12
Release Date:
2015-03-11
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.24
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:anti-PDGF-BB antibody - Light Chain
Chain IDs:A, F (auth: L)
Chain Length:209
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:anti-PDGF-BB antibody - Heavy chain
Chain IDs:B, E (auth: H)
Chain Length:223
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Description:Platelet-derived growth factor subunit B
Chain IDs:C, D
Chain Length:110
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Characterization of Binding Mode of Action of a Blocking Anti-Platelet-Derived Growth Factor (PDGF)-B Monoclonal Antibody, MOR8457, Reveals Conformational Flexibility and Avidity Needed for PDGF-BB To Bind PDGF Receptor-beta.
Biochemistry 54 1918 1929 (2015)
PMID: 25707433 DOI: 10.1021/bi5015425

Abstact

Platelet derived growth factor-BB (PDGF-BB) is an important mitogen and cell survival factor during development. PDGF-BB binds PDGF receptor-β (PDGFRβ) to trigger receptor dimerization and tyrosine kinase activation. We present the pharmacological and biophysical characterization of a blocking PDGF-BB monoclonal antibody, MOR8457, and contrast this to PDGFRβ. MOR8457 binds to PDGF-BB with high affinity and selectivity, and prevents PDGF-BB induced cell proliferation competitively and with high potency. The structural characterization of the MOR8457-PDGF-BB complex indicates that MOR8457 binds with a 2:1 stoichiometry, but that binding of a single MOR8457 moiety is sufficient to prevent binding to PDGFRβ. Comparison of the MOR8457-PDGF-BB structure with that of the PDGFRβ-PDGF-BB complex suggested the potential reason for this was a substantial bending and twisting of PDGF-BB in the MOR8457 structure, relative to the structures of PDGF-BB alone, bound to a PDGF-BB aptamer or PDGFRβ, which makes it nonpermissive for PDGFRβ binding. These biochemical and structural data offer insights into the permissive structure of PDGF-BB needed for agonism as well as strategies for developing specific PDGF ligand antagonists.

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Primary Citation of related structures