4QBC image
Deposition Date 2014-05-07
Release Date 2015-03-11
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4QBC
Keywords:
Title:
Crystal structure of C117T mutant of human acidic fibroblast growth factor in sodium formate buffer
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.52 Å
R-Value Free:
0.19
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Fibroblast growth factor 1
Gene (Uniprot):FGF1
Mutations:C117T
Chain IDs:A, B
Chain Length:146
Number of Molecules:2
Biological Source:Homo sapiens
Primary Citation
Mutation choice to eliminate buried free cysteines in protein therapeutics.
J.Pharm.Sci. 104 566 576 (2015)
PMID: 25312595 DOI: 10.1002/jps.24188

Abstact

Buried free-cysteine (Cys) residues can contribute to an irreversible unfolding pathway that promotes protein aggregation, increases immunogenic potential, and significantly reduces protein functional half-life. Consequently, mutation of buried free-Cys residues can result in significant improvement in the storage, reconstitution, and pharmacokinetic properties of protein-based therapeutics. Mutational design to eliminate buried free-Cys residues typically follows one of two common heuristics: either substitution by Ser (polar and isosteric), or substitution by Ala or Val (hydrophobic); however, a detailed structural and thermodynamic understanding of Cys mutations is lacking. We report a comprehensive structure and stability study of Ala, Ser, Thr, and Val mutations at each of the three buried free-Cys positions (Cys16, Cys83, and Cys117) in fibroblast growth factor-1. Mutation was almost universally destabilizing, indicating a general optimization for the wild-type Cys, including van der Waals and H-bond interactions. Structural response to Cys mutation characteristically involved changes to maintain, or effectively substitute, local H-bond interactions-by either structural collapse to accommodate the smaller oxygen radius of Ser/Thr, or conversely, expansion to enable inclusion of novel H-bonding solvent. Despite the diverse structural effects, the least destabilizing average substitution at each position was Ala, and not isosteric Ser.

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