4Q3N image
Entry Detail
PDB ID:
4Q3N
Keywords:
Title:
Crystal structure of MGS-M5, a lactate dehydrogenase enzyme from a Medee basin deep-sea metagenome library
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2014-04-11
Release Date:
2015-02-25
Method Details:
Experimental Method:
Resolution:
1.97 Å
R-Value Free:
0.18
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
I 41 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:MGS-M5
Chain IDs:A
Chain Length:314
Number of Molecules:1
Biological Source:unidentified
Primary Citation
Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats.
Environ Microbiol 17 332 345 (2015)
PMID: 25330254 DOI: 10.1111/1462-2920.12660

Abstact

The present study provides a deeper view of protein functionality as a function of temperature, salt and pressure in deep-sea habitats. A set of eight different enzymes from five distinct deep-sea (3040-4908 m depth), moderately warm (14.0-16.5°C) biotopes, characterized by a wide range of salinities (39-348 practical salinity units), were investigated for this purpose. An enzyme from a 'superficial' marine hydrothermal habitat (65°C) was isolated and characterized for comparative purposes. We report here the first experimental evidence suggesting that in salt-saturated deep-sea habitats, the adaptation to high pressure is linked to high thermal resistance (P value = 0.0036). Salinity might therefore increase the temperature window for enzyme activity, and possibly microbial growth, in deep-sea habitats. As an example, Lake Medee, the largest hypersaline deep-sea anoxic lake of the Eastern Mediterranean Sea, where the water temperature is never higher than 16°C, was shown to contain halopiezophilic-like enzymes that are most active at 70°C and with denaturing temperatures of 71.4°C. The determination of the crystal structures of five proteins revealed unknown molecular mechanisms involved in protein adaptation to poly-extremes as well as distinct active site architectures and substrate preferences relative to other structurally characterized enzymes.

Legend

Protein

Chemical

Disease

Primary Citation of related structures