4Q2Z image
Deposition Date 2014-04-10
Release Date 2014-09-17
Last Version Date 2024-11-27
Entry Detail
PDB ID:
4Q2Z
Keywords:
Title:
Fab fragment of HIV vaccine-elicited CD4bs-directed antibody, GE356, from a non-human primate
Biological Source:
Source Organism:
Macaca mulatta (Taxon ID: 9544)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.93 Å
R-Value Free:
0.27
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Heavy chain of Fab fragment of HIV vaccine-elicited CD4bs-directed antibody
Chain IDs:A (auth: H), C (auth: A)
Chain Length:233
Number of Molecules:2
Biological Source:Macaca mulatta
Polymer Type:polypeptide(L)
Molecule:Light chain of Fab fragment of HIV vaccine-elicited CD4bs-directed antibody
Chain IDs:B (auth: L), D (auth: B)
Chain Length:212
Number of Molecules:2
Biological Source:Macaca mulatta
Primary Citation
HIV-1 Receptor Binding Site-Directed Antibodies Using a VH1-2 Gene Segment Orthologue Are Activated by Env Trimer Immunization.
Plos Pathog. 10 e1004337 e1004337 (2014)
PMID: 25166308 DOI: 10.1371/journal.ppat.1004337

Abstact

Broadly neutralizing antibodies (bNAbs) isolated from chronically HIV-1 infected individuals reveal important information regarding how antibodies target conserved determinants of the envelope glycoprotein (Env) spike such as the primary receptor CD4 binding site (CD4bs). Many CD4bs-directed bNAbs use the same heavy (H) chain variable (V) gene segment, VH1-2*02, suggesting that activation of B cells expressing this allele is linked to the generation of this type of Ab. Here, we identify the rhesus macaque VH1.23 gene segment to be the closest macaque orthologue to the human VH1-2 gene segment, with 92% homology to VH1-2*02. Of the three amino acids in the VH1-2*02 gene segment that define a motif for VRC01-like antibodies (W50, N58, flanking the HCDR2 region, and R71), the two identified macaque VH1.23 alleles described here encode two. We demonstrate that immunization with soluble Env trimers induced CD4bs-specific VH1.23-using Abs with restricted neutralization breadth. Through alanine scanning and structural studies of one such monoclonal Ab (MAb), GE356, we demonstrate that all three HCDRs are involved in neutralization. This contrasts to the highly potent CD4bs-directed VRC01 class of bNAb, which bind Env predominantly through the HCDR2. Also unlike VRC01, GE356 was minimally modified by somatic hypermutation, its light (L) chain CDRs were of average lengths and it displayed a binding footprint proximal to the trimer axis. These results illustrate that the Env trimer immunogen used here activates B cells encoding a VH1-2 gene segment orthologue, but that the resulting Abs interact distinctly differently with the HIV-1 Env spike compared to VRC01.

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