4PVM image
Deposition Date 2014-03-18
Release Date 2014-11-12
Last Version Date 2024-03-20
Entry Detail
PDB ID:
4PVM
Title:
Neutron structure of human transthyretin (TTR) at room temperature to 2.0A resolution (Laue)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
R-Value Free:
['0.27
R-Value Work:
['0.20
R-Value Observed:
['0.21
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Transthyretin
Gene (Uniprot):TTR
Chain IDs:A, B
Chain Length:130
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Binding site asymmetry in human transthyretin: insights from a joint neutron and X-ray crystallographic analysis using perdeuterated protein
IUCrJ 1 429 438 (2014)
PMID: 25485123 DOI: 10.1107/S2052252514021113

Abstact

Human transthyretin has an intrinsic tendency to form amyloid fibrils and is heavily implicated in senile systemic amyloidosis. Here, detailed neutron structural studies of perdeuterated transthyretin are described. The analyses, which fully exploit the enhanced visibility of isotopically replaced hydrogen atoms, yield new information on the stability of the protein and the possible mechanisms of amyloid formation. Residue Ser117 may play a pivotal role in that a single water molecule is closely associated with the γ-hydrogen atoms in one of the binding pockets, and could be important in determining which of the two sites is available to the substrate. The hydrogen-bond network at the monomer-monomer interface is more extensive than that at the dimer-dimer interface. Additionally, the edge strands of the primary dimer are seen to be favourable for continuation of the β-sheet and the formation of an extended cross-β structure through sequential dimer couplings. It is argued that the precursor to fibril formation is the dimeric form of the protein.

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Primary Citation of related structures