4PR8 image
Entry Detail
PDB ID:
4PR8
Keywords:
Title:
URATE OXIDASE AZIDE URIC ACID TERNARY complex
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2014-03-05
Release Date:
2014-12-24
Method Details:
Experimental Method:
Resolution:
1.16 Å
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Uricase
Chain IDs:A
Chain Length:302
Number of Molecules:1
Biological Source:Aspergillus flavus
Primary Citation
Azide inhibition of urate oxidase.
Acta Crystallogr.,Sect.F 70 896 902 (2014)
PMID: 25005084 DOI: 10.1107/S2053230X14011753

Abstact

The inhibition of urate oxidase (UOX) by azide was investigated by X-ray diffraction techniques and compared with cyanide inhibition. Two well characterized sites for reagents are present in the enzyme: the dioxygen site and the substrate-binding site. To examine the selectivity of these sites towards azide inhibition, several crystallization conditions were developed. UOX was co-crystallized with azide (N3) in the presence or absence of either uric acid (UA, the natural substrate) or 8-azaxanthine (8AZA, a competitive inhibitor). In a second set of experiments, previously grown orthorhombic crystals of the UOX-UA or UOX-8AZA complexes were soaked in sodium azide solutions. In a third set of experiments, orthorhombic crystals of UOX with the exchangeable ligand 8-nitroxanthine (8NXN) were soaked in a solution containing uric acid and azide simultaneously (competitive soaking). In all assays, the soaking periods were either short (a few hours) or long (one or two months). These different experimental conditions showed that one or other of the sites, or the two sites together, could be inhibited. This also demonstrated that azide not only competes with dioxygen as cyanide does but also competes with the substrate for its enzymatic site. A model in agreement with experimental data would be an azide in equilibrium between two sites, kinetically in favour of the dioxygen site and thermodynamically in favour of the substrate-binding site.

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