4PPE image
Deposition Date 2014-02-26
Release Date 2014-03-26
Last Version Date 2024-02-28
Entry Detail
PDB ID:
4PPE
Keywords:
Title:
human RNF4 RING domain
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.28
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:E3 ubiquitin-protein ligase RNF4
Gene (Uniprot):RNF4
Chain IDs:A, B
Chain Length:76
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
RNF4 interacts with both SUMO and nucleosomes to promote the DNA damage response.
Embo Rep. 15 601 608 (2014)
PMID: 24714598 DOI: 10.1002/embr.201338369

Abstact

The post-translational modification of DNA repair and checkpoint proteins by ubiquitin and small ubiquitin-like modifier (SUMO) critically orchestrates the DNA damage response (DDR). The ubiquitin ligase RNF4 integrates signaling by SUMO and ubiquitin, through its selective recognition and ubiquitination of SUMO-modified proteins. Here, we define a key new determinant for target discrimination by RNF4, in addition to interaction with SUMO. We identify a nucleosome-targeting motif within the RNF4 RING domain that can bind DNA and thereby enables RNF4 to selectively ubiquitinate nucleosomal histones. Furthermore, RNF4 nucleosome-targeting is crucially required for the repair of TRF2-depleted dysfunctional telomeres by 53BP1-mediated non-homologous end joining.

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Primary Citation of related structures