4PP8 image
Deposition Date 2014-02-26
Release Date 2014-04-09
Last Version Date 2024-10-30
Entry Detail
PDB ID:
4PP8
Keywords:
Title:
Crystal structure of murine NK cell ligand RAE-1 beta in complex with NKG2D
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 61
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NKG2-D type II integral membrane protein
Gene (Uniprot):Klrk1
Chain IDs:A, B
Chain Length:125
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Retinoic acid early-inducible protein 1-beta
Gene (Uniprot):Raet1b
Chain IDs:C, D
Chain Length:174
Number of Molecules:2
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Crystal structures of RAE-1beta and its complex with the activating immunoreceptor NKG2D.
Immunity 16 77 86 (2002)
PMID: 11825567

Abstact

Induced by retinoic acid and implicated in playing a role in development, rodent RAE-1 proteins are ligands for the activating immunoreceptor NKG2D, widely expressed on natural killer cells, T cells, and macrophages. RAE-1 proteins (alpha, beta, gamma, and delta) are distant major histocompatibility complex (MHC) class I homologs, comprising isolated alpha1alpha2 platform domains. The crystal structure of RAE-1beta was distorted from other MHC homologs and displayed noncanonical disulfide bonds. The loss of any remnant of a peptide binding groove was facilitated by the close approach of the groove-defining helices through a hydrophobic, leucine-rich interface. The RAE-1beta-murine NKG2D complex structure resembled the human NKG2D-MICA receptor-ligand complex and further demonstrated the promiscuity of the NKG2D ligand binding site.

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Primary Citation of related structures