4PMI image
Deposition Date 2014-05-21
Release Date 2014-12-24
Last Version Date 2023-09-27
Entry Detail
PDB ID:
4PMI
Title:
Crystal structure of Rev and Rev-response-element RNA complex
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.20 Å
R-Value Free:
0.21
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 41 3 2
Macromolecular Entities
Polymer Type:polyribonucleotide
Molecule:Rev-Response-Element RNA
Chain IDs:A
Chain Length:40
Number of Molecules:1
Biological Source:Human immunodeficiency virus 1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein Rev
Gene (Uniprot):rev
Mutagens:L12S, L60R, E47A, truncated at residue 70
Chain IDs:B, C
Chain Length:72
Number of Molecules:2
Biological Source:Human immunodeficiency virus type 1 group M subtype B
Ligand Molecules
Primary Citation
RNA-directed remodeling of the HIV-1 protein Rev orchestrates assembly of the Rev-Rev response element complex.
Elife 4 e04120 e04120 (2014)
PMID: 25486594 DOI: 10.7554/eLife.04120

Abstact

The HIV-1 protein Rev controls a critical step in viral replication by mediating the nuclear export of unspliced and singly-spliced viral mRNAs. Multiple Rev subunits assemble on the Rev Response Element (RRE), a structured region present in these RNAs, and direct their export through the Crm1 pathway. Rev-RRE assembly occurs via several Rev oligomerization and RNA-binding steps, but how these steps are coordinated to form an export-competent complex is unclear. Here, we report the first crystal structure of a Rev dimer-RRE complex, revealing a dramatic rearrangement of the Rev-dimer upon RRE binding through re-packing of its hydrophobic protein-protein interface. Rev-RNA recognition relies on sequence-specific contacts at the well-characterized IIB site and local RNA architecture at the second site. The structure supports a model in which the RRE utilizes the inherent plasticity of Rev subunit interfaces to guide the formation of a functional complex.

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Primary Citation of related structures