4PJZ image
Deposition Date 2014-05-13
Release Date 2014-09-10
Last Version Date 2023-12-27
Entry Detail
PDB ID:
4PJZ
Title:
CRYSTAL STRUCTURE OF T4 LYSOZYME-GSS-PEPTIDE IN COMPLEX WITH TEICOPLANIN-A2-2
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.87 Å
R-Value Free:
0.22
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
I 2 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Lysozyme
Gene (Uniprot):e
Mutations:C54T/C97A
Chain IDs:B (auth: A)
Chain Length:174
Number of Molecules:1
Biological Source:Enterobacteria phage T4
Polymer Type:polypeptide(L)
Molecule:TEICOPLANIN-A2-2
Chain IDs:A (auth: B)
Chain Length:7
Number of Molecules:1
Biological Source:Actinoplanes teichomyceticus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MAN F MAN -D
NAG E NAG -D
Peptide-like Molecules
PRD_002089
Primary Citation
X-ray Crystal Structure of Teicoplanin A2-2 Bound to a Catalytic Peptide Sequence via the Carrier Protein Strategy.
J.Org.Chem. 79 8550 8556 (2014)
PMID: 25147913 DOI: 10.1021/jo501625f

Abstact

We report the X-ray crystal structure of a site-selective peptide catalyst moiety and teicoplanin A2-2 complex. The expressed protein ligation technique was used to couple T4 lysozyme (T4L) and a synthetic peptide catalyst responsible for the selective phosphorylation of the N-acetylglucosamine sugar in a teicoplanin A2-2 derivative. The T4L-Pmh-dPro-Aib-dAla-dAla construct was crystallized in the presence of teicoplanin A2-2. The resulting 2.3 Å resolution protein-peptide-teicoplanin complex crystal structure revealed that the nucleophilic nitrogen of N-methylimidazole in the Pmh residue is in closer proximity (7.6 Å) to the N-acetylglucosamine than the two other sugar rings present in teicoplanin (9.3 and 20.3 Å, respectively). This molecular arrangement is consistent with the observed selectivity afforded by the peptide-based catalyst when it is applied to a site-selective phosphorylation reaction involving a teicoplanin A2-2 derivative.

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Primary Citation of related structures