4PHG image
Entry Detail
PDB ID:
4PHG
Title:
Crystal structure of Ypt7 covalently modified with GTP
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2014-05-06
Release Date:
2014-05-28
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.23
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:GTP-binding protein YPT7
Mutations:E35C, K38I, Q68L
Chain IDs:A
Chain Length:184
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae
Primary Citation
Locking GTPases covalently in their functional states.
Nat Commun 6 7773 7773 (2015)
PMID: 26178622 DOI: 10.1038/ncomms8773

Abstact

GTPases act as key regulators of many cellular processes by switching between active (GTP-bound) and inactive (GDP-bound) states. In many cases, understanding their mode of action has been aided by artificially stabilizing one of these states either by designing mutant proteins or by complexation with non-hydrolysable GTP analogues. Because of inherent disadvantages in these approaches, we have developed acryl-bearing GTP and GDP derivatives that can be covalently linked with strategically placed cysteines within the GTPase of interest. Binding studies with GTPase-interacting proteins and X-ray crystallography analysis demonstrate that the molecular properties of the covalent GTPase-acryl-nucleotide adducts are a faithful reflection of those of the corresponding native states and are advantageously permanently locked in a defined nucleotide (that is active or inactive) state. In a first application, in vivo experiments using covalently locked Rab5 variants provide new insights into the mechanism of correct intracellular localization of Rab proteins.

Legend

Protein

Chemical

Disease

Primary Citation of related structures