4PGR image
Deposition Date 2014-05-02
Release Date 2014-06-04
Last Version Date 2023-12-27
Entry Detail
PDB ID:
4PGR
Title:
Crystal structure of YetJ from Bacillus Subtilis at pH 8
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.23
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 65 2 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Uncharacterized protein YetJ
Gene (Uniprot):calJ
Chain IDs:A
Chain Length:217
Number of Molecules:1
Biological Source:Bacillus subtilis
Primary Citation
Structural basis for a pH-sensitive calcium leak across membranes.
Science 344 1131 1135 (2014)
PMID: 24904158 DOI: 10.1126/science.1252043

Abstact

Calcium homeostasis balances passive calcium leak and active calcium uptake. Human Bax inhibitor-1 (hBI-1) is an antiapoptotic protein that mediates a calcium leak and is representative of a highly conserved and widely distributed family, the transmembrane Bax inhibitor motif (TMBIM) proteins. Here, we present crystal structures of a bacterial homolog and characterize its calcium leak activity. The structure has a seven-transmembrane-helix fold that features two triple-helix sandwiches wrapped around a central C-terminal helix. Structures obtained in closed and open conformations are reversibly interconvertible by change of pH. A hydrogen-bonded, pKa (where Ka is the acid dissociation constant)-perturbed pair of conserved aspartate residues explains the pH dependence of this transition, and biochemical studies show that pH regulates calcium influx in proteoliposomes. Homology models for hBI-1 provide insights into TMBIM-mediated calcium leak and cytoprotective activity.

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