ISDA

Deposition Date 2014-04-21

Release Date 2015-01-07

Last Version Date 2024-03-20

Entry Detail

PDB ID:

4PDQ

Keywords:

RNA/ANTIBIOTIC

Title:

Crystal structure of the bacterial ribosomal decoding site in complex with 4'-deoxy-4'-fluoro neomycin analog

Biological Source:

Source Organism:

synthetic (Taxon ID: 32630)

Method Details:

Experimental Method:

X-RAY DIFFRACTION

Resolution:

3.00 Å

R-Value Free:

0.23

R-Value Work:

0.19

R-Value Observed:

0.19

Space Group:

H 3

Download Validation Report

Macromolecular Entities

Polymer Type:polyribonucleotide
Molecule:RNA (5'-*UP*UP*GP*CP*GP*UP*CP*AP*CP*GP*CP*CP*GP*GP*CP*GP*AP*AP*GP*UP*CP*GP*C-3')
Chain IDs:A, B
Chain Length:23
Number of Molecules:2
Biological Source:synthetic

Ligand Molecules

NMZ

Primary Citation

Synthesis, broad spectrum antibacterial activity, and X-ray co-crystal structure of the decoding bacterial ribosomal A-site with 4'-deoxy-4'-fluoro neomycin analogs

Hanessian, S, Saavedra, O.M, Vilchis-Reyes, M.A, Maianti, J.P, Kanazawa, H, Dozzo, P, Matias, R.D, Serio, A, Kondo, J.Show

Chem Sci 5 4621 4632 (2014)

DOI: 10.1039/C4SC01626B

Primary Citation of related structures