4PDP image
Deposition Date 2014-04-19
Release Date 2014-05-28
Last Version Date 2023-09-27
Entry Detail
PDB ID:
4PDP
Keywords:
Title:
Crystal structure of Rad53 kinase domain and SCD2
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.59 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Serine/threonine-protein kinase RAD53
Gene (Uniprot):RAD53
Mutations:A225S,D339A
Chain IDs:A, B
Chain Length:347
Number of Molecules:2
Biological Source:Saccharomyces cerevisiae
Ligand Molecules
Primary Citation
Structural basis of Rad53 kinase activation by dimerization and activation segment exchange.
Cell Signal. 26 1825 1836 (2014)
PMID: 24815189 DOI: 10.1016/j.cellsig.2014.05.004

Abstact

The protein kinase Rad53 is a key regulator of the DNA damage checkpoint in budding yeast. Its human ortholog, CHEK2, is mutated in familial breast cancer and mediates apoptosis in response to genotoxic stress. Autophosphorylation of Rad53 at residue Thr354 located in the kinase activation segment is essential for Rad53 activation. In this study, we assessed the requirement of kinase domain dimerization and the exchange of its activation segment during the Rad53 activation process. We solved the crystal structure of Rad53 in its dimeric form and found that disruption of the observed head-to-tail, face-to-face dimer structure decreased Rad53 autophosphorylation on Thr354 in vitro and impaired Rad53 function in vivo. Moreover, we provide critical functional evidence that Rad53 trans-autophosphorylation may involve the interkinase domain exchange of helix αEF via an invariant salt bridge. These findings suggest a mechanism of autophosphorylation that may be broadly applicable to other protein kinases.

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