4PCS image
Deposition Date 2014-04-16
Release Date 2014-07-09
Last Version Date 2023-12-20
Entry Detail
PDB ID:
4PCS
Keywords:
Title:
Crystal structure of a bacterial fucosidase with iminosugar (2S,3S,4R,5S)-3,4-dihydroxy-2-[2'-phenyl]ethynyl-5-methylpyrrolidine
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.77 Å
R-Value Free:
0.26
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Alpha-L-fucosidase
Gene (Uniprot):BT_2970
Chain IDs:A, B, C, D
Chain Length:439
Number of Molecules:4
Biological Source:Bacteroides thetaiotaomicron
Primary Citation
Exploiting the Hydrophobic Terrain in Fucosidases with Aryl-Substituted Pyrrolidine Iminosugars.
Chembiochem 16 277 283 (2015)
PMID: 25427942 DOI: 10.1002/cbic.201402509

Abstact

Fucosidase inhibition shows potential in numerous therapeutic contexts. Substitution of fucose-like iminosugars with hydrophobic "aglycons" yields significant improvements in potency of fucosidase inhibition. Here we have prepared three new 2-aryl-3,4-dihydroxy-5-methylpyrrolidines featuring phenyl substituents in variable orientations with respect to the iminocyclitol core and at various distances from it to explore the key binding interactions that stabilise the enzyme-inhibitor complex. The presence of a triazole linker in one structure resulted in nanomolar inhibition of the fucosidase from bovine kidney (Ki =4.8 nM), thus giving rise to one of the most potent pyrrolidine-type inhibitors of this enzyme known to date.

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Primary Citation of related structures