4PB6 image
Deposition Date 2014-04-11
Release Date 2015-04-08
Last Version Date 2023-12-20
Entry Detail
PDB ID:
4PB6
Keywords:
Title:
Feline calicivirus VP1 T=1 virus-like particle
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
8.00 Å
R-Value Free:
0.46
R-Value Work:
0.44
R-Value Observed:
0.44
Space Group:
P 21 3
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:VP1
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T
Chain Length:545
Number of Molecules:20
Biological Source:Feline calicivirus
Ligand Molecules
Primary Citation
Structure determination of feline calicivirus virus-like particles in the context of a pseudo-octahedral arrangement.
Plos One 10 e0119289 e0119289 (2015)
PMID: 25794153 DOI: 10.1371/journal.pone.0119289

Abstact

The vesivirus feline calicivirus (FCV) is a positive strand RNA virus encapsidated by an icosahedral T=3 shell formed by the viral VP1 protein. Upon its expression in the insect cell - baculovirus system in the context of vaccine development, two types of virus-like particles (VLPs) were formed, a majority built of 60 subunits (T=1) and a minority probably built of 180 subunits (T=3). The structure of the small particles was determined by x-ray crystallography at 0.8 nm resolution helped by cryo-electron microscopy in order to understand their formation. Cubic crystals belonged to space group P213. Their self-rotation function showed the presence of an octahedral pseudo-symmetry similar to the one described previously by Agerbandje and co-workers for human parvovirus VLPs. The crystal structure could be solved starting from the published VP1 structure in the context of the T=3 viral capsid. In contrast to viral capsids, where the capsomers are interlocked by the exchange of the N-terminal arm (NTA) domain, this domain is disordered in the T=1 capsid of the VLPs. Furthermore it is prone to proteolytic cleavage. The relative orientation of P (protrusion) and S (shell) domains is alerted so as to fit VP1 to the smaller T=1 particle whereas the intermolecular contacts around 2-fold, 3-fold and 5-fold axes are conserved. By consequence the surface of the VLP is very similar compared to the viral capsid and suggests a similar antigenicity. The knowledge of the structure of the VLPs will help to improve their stability, in respect to a use for vaccination.

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Primary Citation of related structures