4P3Y image
Deposition Date 2014-03-10
Release Date 2014-06-18
Last Version Date 2023-10-25
Entry Detail
PDB ID:
4P3Y
Title:
Crystal structure of Acinetobacter baumannii DsbA in complex with EF-Tu
Biological Source:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.15 Å
R-Value Free:
0.21
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Elongation factor Tu 1
Gene (Uniprot):tufA
Chain IDs:A
Chain Length:394
Number of Molecules:1
Biological Source:Escherichia coli BL21(DE3)
Polymer Type:polypeptide(L)
Molecule:Thiol:disulfide interchange protein
Chain IDs:B
Chain Length:182
Number of Molecules:1
Biological Source:Acinetobacter baumannii AYE
Primary Citation
Structure of the Acinetobacter baumannii Dithiol Oxidase DsbA Bound to Elongation Factor EF-Tu Reveals a Novel Protein Interaction Site.
J.Biol.Chem. 289 19869 19880 (2014)
PMID: 24860094 DOI: 10.1074/jbc.M114.571737

Abstact

The multidrug resistant bacterium Acinetobacter baumannii is a significant cause of nosocomial infection. Biofilm formation, that requires both disulfide bond forming and chaperone-usher pathways, is a major virulence trait in this bacterium. Our biochemical characterizations show that the periplasmic A. baumannii DsbA (AbDsbA) enzyme has an oxidizing redox potential and dithiol oxidase activity. We found an unexpected non-covalent interaction between AbDsbA and the highly conserved prokaryotic elongation factor, EF-Tu. EF-Tu is a cytoplasmic protein but has been localized extracellularly in many bacterial pathogens. The crystal structure of this complex revealed that the EF-Tu switch I region binds to the non-catalytic surface of AbDsbA. Although the physiological and pathological significance of a DsbA/EF-Tu association is unknown, peptides derived from the EF-Tu switch I region bound to AbDsbA with submicromolar affinity. We also identified a seven-residue DsbB-derived peptide that bound to AbDsbA with low micromolar affinity. Further characterization confirmed that the EF-Tu- and DsbB-derived peptides bind at two distinct sites. These data point to the possibility that the non-catalytic surface of DsbA is a potential substrate or regulatory protein interaction site. The two peptides identified in this work together with the newly characterized interaction site provide a novel starting point for inhibitor design targeting AbDsbA.

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