4OZF image
Deposition Date 2014-02-15
Release Date 2014-04-16
Last Version Date 2024-11-20
Entry Detail
PDB ID:
4OZF
Keywords:
Title:
JR5.1 protein complex
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Triticum aestivum (Taxon ID: 4565)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 1 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HLA class II histocompatibility antigen, DQ alpha 1 chain
Gene (Uniprot):HLA-DQA1
Chain IDs:A
Chain Length:191
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:HLA class II histocompatibility antigen, DQ beta 1 chain
Gene (Uniprot):HLA-DQB1
Chain IDs:B
Chain Length:213
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:T-CELL RECEPTOR, JR5.1 ALPHA CHAIN
Mutagens:T174C
Chain IDs:C (auth: G)
Chain Length:202
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:T-CELL RECEPTOR, JR5.1 BETA CHAIN
Mutagens:S184C, C202A
Chain IDs:D (auth: H)
Chain Length:244
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:deamidated Gliadin-alpha2 peptide
Mutagens:Q5E
Chain IDs:E (auth: J)
Chain Length:13
Number of Molecules:1
Biological Source:Triticum aestivum
Ligand Molecules
Primary Citation
T-cell receptor recognition of HLA-DQ2-gliadin complexes associated with celiac disease.
Nat.Struct.Mol.Biol. 21 480 488 (2014)
PMID: 24777060 DOI: 10.1038/nsmb.2817

Abstact

Celiac disease is a T cell-mediated disease induced by dietary gluten, a component of which is gliadin. 95% of individuals with celiac disease carry the HLA (human leukocyte antigen)-DQ2 locus. Here we determined the T-cell receptor (TCR) usage and fine specificity of patient-derived T-cell clones specific for two epitopes from wheat gliadin, DQ2.5-glia-α1a and DQ2.5-glia-α2. We determined the ternary structures of four distinct biased TCRs specific for those epitopes. All three TCRs specific for DQ2.5-glia-α2 docked centrally above HLA-DQ2, which together with mutagenesis and affinity measurements provided a basis for the biased TCR usage. A non-germline encoded arginine residue within the CDR3β loop acted as the lynchpin within this common docking footprint. Although the TCRs specific for DQ2.5-glia-α1a and DQ2.5-glia-α2 docked similarly, their interactions with the respective gliadin determinants differed markedly, thereby providing a basis for epitope specificity.

Legend

Protein

Chemical

Disease

Primary Citation of related structures