4OWX image
Deposition Date 2014-02-04
Release Date 2014-04-16
Last Version Date 2023-12-27
Entry Detail
PDB ID:
4OWX
Title:
Structural basis of SOSS1 in complex with a 12nt ssDNA
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Integrator complex subunit 3
Gene (Uniprot):INTS3
Chain IDs:B (auth: A)
Chain Length:500
Number of Molecules:1
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SOSS complex subunit B1
Gene (Uniprot):NABP2
Chain IDs:C (auth: B)
Chain Length:211
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*T)-3')
Chain IDs:A (auth: L)
Chain Length:12
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Structural Basis of SOSS1 Complex Assembly and Recognition of ssDNA.
Cell Rep 6 982 991 (2014)
PMID: 24630995 DOI: 10.1016/j.celrep.2014.02.020

Abstact

The SOSS1 complex comprising SOSSA, SOSSB1, and SOSSC senses single-stranded DNA (ssDNA) and promotes repair of DNA double-strand breaks (DSBs). But how SOSS1 is assembled and recognizes ssDNA remains elusive. The crystal structure of the N-terminal half of SOSSA (SOSSAN) in complex with SOSSB1 and SOSSC showed that SOSSAN serves as a scaffold to bind both SOSSB1 and SOSSC for assembly of the SOSS1 complex. The structures of SOSSAN/B1 in complex with a 12 nt ssDNA and SOSSAN/B1/C in complex with a 35 nt ssDNA showed that SOSSB1 interacts with both SOSSAN and ssDNA via two distinct surfaces. Recognition of ssDNA with a length of up to nine nucleotides is mediated solely by SOSSB1, whereas neither SOSSC nor SOSSAN are critical for ssDNA binding. These results reveal the structural basis of SOSS1 assembly and provide a framework for further study of the mechanism governing longer ssDNA recognition by the SOSS1 complex during DSB repair.

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Primary Citation of related structures