4OSO image
Deposition Date 2014-02-13
Release Date 2014-10-01
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4OSO
Title:
The crystal structure of landomycin C-6 ketoreductase LanV with bound NADP and rabelomycin
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.50 Å
R-Value Free:
0.23
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 41 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Reductase homolog
Gene (Uniprot):lanV
Chain IDs:A, B
Chain Length:263
Number of Molecules:2
Biological Source:Streptomyces cyanogenus
Primary Citation
Structure-based engineering of angucyclinone 6-ketoreductases.
Chem.Biol. 21 1381 1391 (2014)
PMID: 25200607 DOI: 10.1016/j.chembiol.2014.07.017

Abstact

Angucyclines are tetracyclic polyketides produced by Streptomyces bacteria that exhibit notable biological activities. The great diversity of angucyclinones is generated in tailoring reactions, which modify the common benz[a]anthraquinone carbon skeleton. In particular, the opposite stereochemistry of landomycins and urdamycins/gaudimycins at C-6 is generated by the short-chain alcohol dehydrogenases/reductases LanV and UrdMred/CabV, respectively. Here we present crystal structures of LanV and UrdMred in complex with NADP(+) and the product analog rabelomycin, which enabled us to identify four regions associated with the functional differentiation. The structural analysis was confirmed in chimeragenesis experiments focusing on these regions adjacent to the active site cavity, which led to reversal of the activities of LanV and CabV. The results surprisingly indicated that the conformation of the substrate and the stereochemical outcome of 6-ketoreduction appear to be intimately linked.

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