4OKZ image
Deposition Date 2014-01-23
Release Date 2014-06-11
Last Version Date 2023-09-20
Entry Detail
PDB ID:
4OKZ
Keywords:
Title:
Selinadiene Synthase in complex with dihydrofarnesyl pyrophosphate
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Terpene synthase metal-binding domain-containing protein
Gene (Uniprot):SSDG_02809
Chain IDs:A, B, C, D
Chain Length:365
Number of Molecules:4
Biological Source:Streptomyces pristinaespiralis
Primary Citation
Induced-fit mechanism in class i terpene cyclases.
Angew.Chem.Int.Ed.Engl. 53 7652 7656 (2014)
PMID: 24890698 DOI: 10.1002/anie.201403648

Abstact

We present crystallographic and functional data of selina-4(15),7(11)-diene synthase (SdS) from Streptomyces pristinaespiralis in its open and closed (ligand-bound) conformation. We could identify an induced-fit mechanism by elucidating a rearrangement of the G1/2 helix-break motif upon substrate binding. This rearrangement highlights a novel effector triad comprising the pyrophosphate sensor Arg178, the linker Asp181, and the effector Gly182-O. This structural motif is strictly conserved in class I terpene cyclases from bacteria, fungi, and plants, including epi-isozizaene synthase (3KB9), aristolochene synthase (4KUX), bornyl diphosphate synthase (1N20), limonene synthase (2ONG), 5-epi-aristolochene synthase (5EAT), and taxa-4(5),11(12)-diene synthase (3P5R). An elaborate structure-based mutagenesis in combination with analysis of the distinct product spectra confirmed the mechanistic models of carbocation formation and stabilization in SdS.

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Primary Citation of related structures